LncRNA Information
ID EL0998 Name npc48 Aliases N/A
Species Arabidopsis thaliana Chromosome N/A Start site N/A
End site N/A Chain N/A Exon NO. N/A
Assembly N/A Class antisense NCBI accession HG975424
Ensembl N/A Sequence

Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
qRT-PCR leaf serration and flowering time up-regulated N/A Overexpressing the npc48 showed drastic developmental anomalies, including an increase in the rosette diameter, leaf serration, and a delay in the flowering time compared with wild-type plants (Fig. 6A). Overexpression of npc48 led to leaf serration, a phenotype that has been observed in several Arabidopsis mutants such as se or ago1. Quantitative RT-PCR analysis of npc48 accumulation revealed that all transgenic lines exhibiting this phenotype overaccumulated npc48 (Supplemental Fig. 3). 18997003 PLNlncRbase

Interaction target Level of interaction Type of interaction Description PMID Source
miR168/miR164/miR166 RNA-RNA regulation The phenotype of 35S∷npc48 plants resembled that of 35S∷MIR168 plants, which have reduced levels of the miR168 AGO1 target, and of AGO1-sensitive miRNAs such as miR166 (Vaucheret et al. 2006). 35S∷npc48 plants also showed a decrease in miR166 accumulation, but accumulated AGO1 mRNA and miR168 at wild-type levels. In addition, 35S∷npc48 plants, but not 35S∷MIR168 plants, exhibited reduced accumulation of miR164, suggesting that npc48 could regulate a subset of miRNAs. 18997003 PLNlncRbase