LncRNA Information
ID EL0522 Name GAL10 Aliases YBR019C
Species Saccharomyces cerevisiae S288c Chromosome II Start site 276253
End site 278352 Chain minus Exon NO. 1
Assembly Build 3.1 Class N/A NCBI accession N/A
Ensembl N/A Sequence N/A


Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
N/A N/A N/A interaction The GAL lncRNAs could also promote transcriptional activation of the targeted GAL protein-coding genes. Interestingly, these lncRNAs help determine how quickly the GAL genes can be induced in response to galactose, without altering final steady-state transcript levels. 24563719
 


Interaction
Interaction target Level of interaction Type of interaction Description PMID Source
H3 RNA-Protein regulation Cryptic ncRNA transcription can direct H3 K36me3 formation over repressed genes and intergenic regions, which otherwise lack this histone modification. 19061643 LncRNADisease
Reb1 RNA-Protein regulation Reb1-driven ncRNA transcription causes reduced acetylation of specific histone residues over the GAL1 and GAL10 coding regions. 19061643 LncRNADisease
TRAMP complexes RNA-Protein regulation The GAL10-ncRNA is targeted for degradation by the TRAMP complexes. 19061643 LncRNADisease
Reb1 DNA-TF regulation Transcription of GAL10-ncRNA is driven by the DNA-binding protein Reb1. 19061643 LncRNADisease
RAT1 RNA-RNA co-expression The importance of RAT1 was reinforced by the finding that GAL10 lncRNA was more functionally compromised by loss of RAT1 than XRN1. 22325347 LncRNADisease