LncRNA Information | ||||||
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ID | EL1395 | Name | TU781 | Aliases | N/A | |
Species | Ganoderma lucidum | Chromosome | N/A | Start site | N/A | |
End site | N/A | Chain | N/A | Exon NO. | N/A | |
Assembly | N/A | Class | lincRNA | NCBI accession | N/A | |
Ensembl | N/A | Sequence | N/A |
Function (not disease relevant) | |||||||||
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Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
RNA-seq, qRT-PCR | fruiting bodies, mycelia and primordia stages | up-regulated | N/A | The expression profiles of 11 lincRNAs were positively correlated with their corresponding apcGenes (r>0.8; Figure 5A). The apcGenes of TU5846, TU506, TU6607, TU6608, TU1273, and TU1403 are all CYP450 genes. The apcGenes of TU4652 and TU781 are a laccase 3 (GL29234) and a glyoxal oxidase precursor (GL20538), respectively, which belong to the lignin degradation pathway. | 24932683 | PLNlncRbase | |||
Interaction | |||||||||
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Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
GL20538 | RNA-DNA | regulation | In the 16 lincRNA/apcGene pairs that showed significantly positive or negative correlation, 9 apcGenes are involved in wood degradation and 6 apcGenes belong to the CYP450 families, suggesting genes involved in these biological processes be potentially regulated by lincRNAs. | 24932683 | PLNlncRbase | ||||