LncRNA Information | ||||||
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ID | EL1353 | Name | TPS11 | Aliases | N/A | |
Species | Solanum lycopersicum | Chromosome | N/A | Start site | N/A | |
End site | N/A | Chain | N/A | Exon NO. | N/A | |
Assembly | N/A | Class | lincRNA | NCBI accession | N/A | |
Ensembl | N/A | Sequence | N/A |
Function (not disease relevant) | |||||||||
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Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
Northern blot/Southern blot | roots | up-regulated | N/A | This lncRNAs work as a decoy of miRNAs,and exert their functions by binding miRNAs in a target mimicry mechanism to sequestrate the miRNAs’ regulation roles on their target genes, such as lncRNAs IPS1 and at4. | 23726911 | PLNlncRbase | |||
Interaction | |||||||||
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Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
miR399 | RNA-RNA | binding | IPS1 and At4 directly inhibits miR-399 activity.IPS1 has many family members in a number of plant species, including At4, At4–1, At4–2 and At4–3 in Arabidopsis thaliana, TPS11 in tomato, Mt4 in Barrel Clover and Alfalfa, Mt4-like in Soybean | 23726911 | PLNlncRbase | ||||