LncRNA Information | ||||||
---|---|---|---|---|---|---|
ID | EL1298 | Name | TCONS_00048079 | Aliases | N/A | |
Species | Populus tomentosa | Chromosome | N/A | Start site | N/A | |
End site | N/A | Chain | N/A | Exon NO. | N/A | |
Assembly | N/A | Class | lincRNA | NCBI accession | N/A | |
Ensembl | N/A | Sequence | N/A |
Function (not disease relevant) | |||||||||
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Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
RNA-seq/qRT-PCR | wood formation | up-regulated | N/A | We also checked the sequences for lncRNAs that correspond to miRNA precursors, and found that only three of the 1377 lncRNAs (0.2 %), i.e., TCONS_00061773,TCONS_00023843 and TCONS_00048079, harbor complete precursors, for four miRNAs (Ptc-miR1448, Ptc-miR482a.2, Ptu-172 and Ptu-37) (Table 4; Fig. 7). | 25230698 | PLNlncRbase | |||
Interaction | |||||||||
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Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
Ptc-miR1448/Ptc-miR482a.2/Ptu-172/Ptu-37 | RNA-RNA | regulation | only three of the 1377 lncRNAs (0.2 %), i.e., TCONS_00061773, TCONS_00023843 and TCONS_00048079, harbor complete precursors, for four miRNAs (Ptc-miR1448, PtcmiR482a.2, Ptu-172 and Ptu-37) | 25230698 | PLNlncRbase | ||||