LncRNA Information
ID EL1208 Name Six3os1 Aliases D17Mgi26; E130112H22Rik; Rncr1; Six3os
Species Mus musculus Chromosome 17 Start site 85600651
End site 85618398 Chain minus Exon NO. 7
Assembly Ensembl Release 89 Class antisense NCBI accession NR_038085, NR_015387, NR_015386, NR_038086, NR_038083, NR_038082, NR_038084, NR_015385
Ensembl ENSMUSG00000093460 Sequence


Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
RNA-seq, RNA CaptureSeq, and ChIP-seq adult mouse subventricular zone neural stem cell lineage N/A expression shRNA-mediated knockdown of two such lncRNAs, Six3os and Dlx1as, indicate roles for lncRNAs in the glial-neuronal lineage specification of multipotent adult stem cells. 23583100
SAGE, in situ hybridization developing retina N/A expression Multiple transcripts that were evolutionarily conserved that did not appear to encode open reading frames of more than 100 amino acids in length ("noncoding rnas") were found to be dynamically and specifically expressed in developing and mature retinal cell types. 15226823
 


Interaction
Interaction target Level of interaction Type of interaction Description PMID Source
Eya1 RNA-Protein binding Ezh2 and Eya1/3/4 directly bind Six3OS. 21936910 LncRNADisease
Eya3 RNA-Protein binding Ezh2 and Eya1/3/4 directly bind Six3OS. 21936910 LncRNADisease
Eya4 RNA-Protein binding Ezh2 and Eya1/3/4 directly bind Six3OS. 21936910 LncRNADisease
Ezh2 RNA-Protein binding Ezh2 and Eya1/3/4 directly bind Six3OS. 21936910 LncRNADisease
Six3 RNA-RNA co-expression Six3OS was coexpressed with Six3 in retinal progenitors. 21936910 LncRNADisease