| LncRNA Information | ||||||
|---|---|---|---|---|---|---|
| ID | EL1000 | Name | npc531 | Aliases | N/A | |
| Species | Arabidopsis thaliana | Chromosome | N/A | Start site | N/A | |
| End site | N/A | Chain | N/A | Exon NO. | N/A | |
| Assembly | N/A | Class | antisense | NCBI accession | N/A | |
| Ensembl | N/A | Sequence | N/A | |||
| Function (not disease relevant) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
| qRT-PCR | dcl1-9 mutant | up-regulated | N/A | In addition to npcRNAs corresponding to conserved miRNAs, the npc531, which was not previously linked to RNA silencing mechanisms or known to encode a miRNA, also was upregulated in a dcl1-9 mutant, a difference confirmed using quantitative RT-PCR (Fig. 4A, left panel). No known miRNAs map to this gene, suggesting that, alternatively, it could be the target of a miRNA. We identified a putative miR319 target site in npc531 (Fig. 4A, right panel), but 5 RACE-PCR analyses did not reveal any specific cleavage of this transcript in this site (data not shown). | 18997003 | PLNlncRbase | |||
| Interaction | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
| miR319 | RNA-RNA | regulation | We identified a putative miR319 target site in npc531, but 5′ RACE-PCR analyses did not reveal any specific cleavage of this transcript in this site (data not shown) | 18997003 | PLNlncRbase | ||||