INTERACTION
ID	lncRNA Name	Interaction target	Level of interaction	Type of interaction	Description	PMID	Source
EL0300	COOLAIR	AtNDX	DNA-Protein	binding	AtNDX associates with single-stranded DNA rather than double-stranded DNA non-sequence-specifically in vitro, and localizes to a heterochromatic region in the COOLAIR promoter in vivo. Single-stranded DNA was detected in vivo as part of an RNA-DNA hybrid, or R-loop, that covers the COOLAIR promoter. R-loop stabilization mediated by AtNDX inhibits COOLAIR transcription, which in turn modifies FLC expression.	23641115
EL0300	COOLAIR	FLOWERING LOCUS C (FLC)	RNA-DNA	regulation	Alternative polyadenylation of COOLAIR transcripts correlates with different FLC sense expression states.	24799695
EL0300	COOLAIR	cyclin-dependent kinase C (CDKC;2)	RNA-Protein	regulation	In the endogenous gene context, however, the reduction of COOLAIR transcription by cdkc;2 disrupts a COOLAIR-mediated repression mechanism that increases FLC expression. This disruption then feeds back to indirectly increase COOLAIR expression.	24799695